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User Guide
- MyGenomeBox allow to use your raw genetic data form Gene2me, 23andMe, AncestryDNA, FamilyTreeDNA and VCF to create personalized genetic reports that will help you find the genetic information that`s right for you.
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NGSOne
- Payment Method
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Convert WGS(Whole Genome Sequencing) and WES(Whole Exome Sequencing) files to VCF / Genotype format by using MyGenomeBox NGSOne and pay the DNA App.
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Data conversion price
| Service Name | WGS | WES | |||||
|---|---|---|---|---|---|---|---|
| 20G | 40G | 60G | 80G | 20G | |||
 |
Time(min) | 60 | 90 | 110 | 130 | 30 | |
| Price |
20% 30P 24P |
20% 45P 36P |
20% 50P 40P |
20% 65P 52P |
20% 20P 16P |
||
 |
Time(min) | 1200 | 2000 | 2500 | 3000 | 600 | |
| Price($) |
20% 20P 16P |
25% 36P 27P |
25% 44P 33P |
28% 50P 36P |
25% 12P 9P |
||
 |
Time(min) | 150 | 220 | 280 | 360 | 70 | |
| Price($) |
20% 15P 12P |
20% 30P 24P |
20% 40P 32P |
25% 64P 48P |
25% 16P 12P |
||
 |
Time(min) | 140 | 500 | 730 | 900 | 80 | |
| Price($) |
20% 15P 12P |
25% 28P 21P |
25% 44P 33P |
30% 60P 42P |
25% 16P 12P |
||
※ Please contact team_helix@mygenomebox.com for any questions.
This app is available on the desktop after install.
More download options
Detailed description
The MGB whole genome and exome data analysis app provides the three different NGS data analysis tools. It only required your NGS raw data and all process of analysis will continue automatically with the appropriate settings. The pipelines in these analysis tools include alignment, mapping, sorting, duplicate marking, variant calling and generate the final VCF file for downstream analysis.
Highlights
- Comprehensive & Various
- A rich set of pipeline for whole human genome and whole exome sequencing data analysis
- No need Server
- All process run in the Cloud
- Easy to use
- Just drop fastq.gz files into App
SNP Errors on Hiseq2500 PCR-Free 35X WGS
INDEL Errors on Hiseq2500 PCR-Free 35X WGS
***The results above are based on the page in a trusted third party (DNAnexus) Blog
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1) GATK4 Best Practices
This analysis tool uses the open-sourced Genome Analysis Toolkit 4 from Broad institute. The pipeline in this tool is based on the GATK Best Practices Workflow for performing variant discovery analysis in NGS data. Mapping to a reference genome is performed by BWA and the calling SNPs and indels is achieved by using the GATK HaplotypeCaller.
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2) DRAGEN analysis
Illumina DRAGEN Complete Suite is an application that provides a comprehensive pipeline package for analyzing NGS data. The DRAGEN GATK Best Practices pipeline, used in this app, takes advantage of DRAGEN's ultra-fast analysis method to speed up the open-sourced GATK 4.0 Haplotype Variant Caller. This pipeline contains all required analysis steps (mapping / aligning, position sorting, duplicate marking, and variant calling) specified by the Broad Institute. The advantages of DRAGEN are ultra-rapid speed, cost savings and high accuracy.
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3) Isaac/Strelka2 analysis
This analysis mode uses Isaac aligner4 for alignment and uses Strelka2 for variant calling. Isaac aligner4 is a new high-speed read mapping tool included in the illumina hiseq analysis software. It provides read mapping, sorting, PCR duplicate removal, and bam file generation into one optimization task. The generated bam file is used to generate a VCF file by the Strelka2 Germline variant caller. Strelka2 is a fast and accurate small variant caller optimized for analysis of germline variation in small cohorts and somatic variation in tumor/normal sample pairs.
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4) Google DeepVariant
This analysis mode uses Isaac aligner4 for alignment and uses Google DeepVariant for variant calling. Isaac aligner4 is a new high-speed read mapping tool included in the illumina hiseq analysis software. It provides read mapping, sorting, PCR duplicate removal, and bam file generation into one optimization task. DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from aligned reads. For technical details describing how DeepVariant works please see the paper Nature Biotechnology publication.
